Package | Description |
---|---|
jebl.evolution.align.scores |
Modifier and Type | Class and Description |
---|---|
class |
AminoAcidScores |
class |
Blosum45 |
class |
Blosum50 |
class |
Blosum55 |
class |
Blosum60 |
class |
Blosum62 |
class |
Blosum65 |
class |
Blosum70 |
class |
Blosum75 |
class |
Blosum80 |
class |
Blosum85 |
class |
Blosum90 |
class |
Hamming |
class |
JukesCantor
Jukes Cantor assumes equal substitution frequencies and equal nucleotide
equilibrium frequencies.
|
class |
NucleotideScores |
class |
Pam100 |
class |
Pam110 |
class |
Pam120 |
class |
Pam130 |
class |
Pam140 |
class |
Pam150 |
class |
Pam160 |
class |
Pam170 |
class |
Pam180 |
class |
Pam190 |
class |
Pam200 |
class |
Pam210 |
class |
Pam220 |
class |
Pam230 |
class |
Pam240 |
class |
Pam250 |
class |
Scores
Base class for all score matrices in the package.
|
class |
SubstScoreMatrix |
Modifier and Type | Method and Description |
---|---|
static Scores |
Scores.forMatrix(ScoreMatrix scoreMatrix) |
http://code.google.com/p/jebl2/