Interface | Description |
---|---|
ScoreMatrix |
Class | Description |
---|---|
AminoAcidScores | |
Blosum45 | |
Blosum50 | |
Blosum55 | |
Blosum60 | |
Blosum62 | |
Blosum65 | |
Blosum70 | |
Blosum75 | |
Blosum80 | |
Blosum85 | |
Blosum90 | |
Hamming | |
JukesCantor |
Jukes Cantor assumes equal substitution frequencies and equal nucleotide
equilibrium frequencies.
|
NucleotideScores | |
Pam100 | |
Pam110 | |
Pam120 | |
Pam130 | |
Pam140 | |
Pam150 | |
Pam160 | |
Pam170 | |
Pam180 | |
Pam190 | |
Pam200 | |
Pam210 | |
Pam220 | |
Pam230 | |
Pam240 | |
Pam250 | |
Scores |
Base class for all score matrices in the package.
|
ScoresFactory | |
SubstScoreMatrix |
http://code.google.com/p/jebl2/