Package | Description |
---|---|
jebl.evolution.align |
Provides classes and interfaces for pairwise alignment of two sequences.
|
Modifier and Type | Class and Description |
---|---|
class |
MaximalSegmentPair |
class |
NeedlemanWunsch |
class |
NeedlemanWunschAffine |
class |
NeedlemanWunschLinearSpace |
class |
NeedlemanWunschLinearSpaceAffine |
class |
NonOverlapMultipleLocalAffine
Performs recursive local alignments.
|
class |
OldNeedlemanWunschAffine |
class |
OverlapAlign |
class |
SmithWaterman |
class |
SmithWatermanLinearSpace |
class |
SmithWatermanLinearSpaceAffine |
Modifier and Type | Method and Description |
---|---|
void |
SequenceShuffler.shuffle(Align algorithm,
java.lang.String sq1,
java.lang.String sq2,
int numShuffles) |
http://code.google.com/p/jebl2/